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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
29
ATAC-seq
17
pCHi-C
7
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
42
DNA binding
29
DNA accessibility
11
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
5
RNA binding protein
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
bigWig
277
bam
173
tsv
133
bed narrowPeak
90
tagAlign
2
bed bed3+
1
hic
Organism
97
Homo sapiens
Biosample type
43
in vitro differentiated cells
36
primary cell
18
cell line
2
stem cell
2
tissue
Organ
18
pancreas
17
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
79
AMP
17
T1D
4
community
1
ITG
Genome assembly (visualization)
14
GRCh38
13
hg19
Lab
60
Kyle Gaulton, UCSD
36
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
17
inconsistent ontology term
files.file_type!
bigWig
month_released!
May, 2019
BIOSAMPLE
ASSAY
101 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
Hi-C
shRNA RNA-seq
siRNA RNA-seq
in vitro differentiated cells
embryonic stem cell
37
5
pancreatic PP cell
1
primary cell
monocyte
1
13
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
B cell
1
+ See 11 more…
cell line
EndoC_BH1
16
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
tissue
pancreas
1
thymus
1
See all biosamples
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