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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
40
ATAC-seq
17
pCHi-C
8
total RNA-seq
3
single cell RNA-seq
1
DNAme array
Assay category
42
DNA binding
40
DNA accessibility
11
Transcription
1
DNA methylation
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
5
RNA binding protein
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
bigWig
277
bam
173
tsv
133
bed narrowPeak
90
tagAlign
2
bed bed3+
Organism
111
Homo sapiens
Biosample type
43
in vitro differentiated cells
35
primary cell
17
tissue
16
cell line
Organ
18
pancreas
17
epithelium
14
kidney
2
connective tissue
1
adipose tissue
1
bone element
1
bone marrow
1
thymus
Project
94
AMP
17
T1D
Genome assembly (visualization)
25
GRCh38
14
hg19
Lab
60
Kyle Gaulton, UCSD
37
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
17
inconsistent ontology term
files.file_type!
bigWig
month_released!
May, 2019
BIOSAMPLE
ASSAY
111 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
single cell RNA-seq
DNAme array
in vitro differentiated cells
embryonic stem cell
37
5
pancreatic PP cell
1
primary cell
monocyte
1
13
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
B cell
1
+ See 10 more…
tissue
kidney
11
3
adipose tissue
1
pancreas
1
thymus
1
cell line
EndoC_BH1
16
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