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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
34
ATAC-seq
17
pCHi-C
9
total RNA-seq
1
DNAme array
Assay category
75
DNA binding
34
DNA accessibility
9
Transcription
1
DNA methylation
Target of assay
55
histone
55
histone modification
32
broad histone mark
23
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
November, 2017
249
October, 2019
237
August, 2017
218
June, 2019
200
May, 2022
189
February, 2023
172
August, 2021
148
February, 2021
136
May, 2021
120
May, 2019
102
May, 2020
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
303
bigWig
277
bam
tsv
133
bed narrowPeak
tagAlign
2
bed bed3+
Organism
136
Homo sapiens
Biosample type
70
primary cell
47
in vitro differentiated cells
17
cell line
2
tissue
Organ
18
pancreas
17
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
118
AMP
18
T1D
Genome assembly (visualization)
54
hg19
14
GRCh38
Lab
100
Kyle Gaulton, UCSD
36
AMP-T2D consortium
Audit category:
18
inconsistent ontology term
files.file_type!
tagAlign
tsv
month_released!
November, 2017
BIOSAMPLE
ASSAY
136 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
primary cell
CD8-positive, alpha-beta T cell
33
1
2
monocyte
1
13
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
1
16
tissue
pancreas
1
thymus
1
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