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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
total RNA-seq
14
ATAC-seq
1
ChIP-seq
Assay category
173
Transcription
14
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
564
February, 2021
325
November, 2017
263
August, 2017
233
May, 2020
218
June, 2019
201
October, 2019
187
May, 2021
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
39
February, 2018
34
December, 2018
30
January, 2019
25
August, 2021
24
May, 2022
16
March, 2020
11
September, 2017
8
October, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
303
bigWig
278
bam
173
tsv
133
bed narrowPeak
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
188
Homo sapiens
Biosample type
79
in vitro differentiated cells
65
primary cell
39
tissue
5
cell line
Organ
42
pancreas
7
epithelium
3
heart
2
embryo
1
connective tissue
Project
136
AMP
52
T1D
Genome assembly (visualization)
187
GRCh38
187
hg19
Lab
136
AMP-T2D consortium
51
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
70
inconsistent ontology term
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
188 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
in vitro differentiated cells
cardiomyocytes
59
induced pluripotent stem cell
9
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
endothelial cell
1
+ See 8 more…
primary cell
monocyte
51
13
embryonic stem cell
1
tissue
islet of Langerhans
36
1
cardiac atrium
1
cardiac ventricle
1
cell line
EndoC_BH1
4
1
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