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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
20
ChIP-seq
17
pCHi-C
5
ATAC-seq
Assay category
59
Transcription
20
DNA binding
5
DNA accessibility
Target of assay
134
histone
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
198
May, 2022
165
August, 2021
102
February, 2023
101
May, 2021
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
61
bigWig
51
bam
51
tsv
2
bed bed3+
Organism
101
Homo sapiens
Biosample type
72
primary cell
27
in vitro differentiated cells
2
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
1
pancreas
1
thymus
Project
68
T1D
33
AMP
Genome assembly (visualization)
61
hg19
51
GRCh38
Lab
AMP-T2D consortium
101
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
101 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
primary cell
monocyte
51
1
CD8-positive, alpha-beta T cell
2
3
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
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in vitro differentiated cells
embryonic stem cell
5
17
5
tissue
pancreas
1
thymus
1
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