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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
42
ChIP-seq
29
ATAC-seq
1
DNAme array
1
total RNA-seq
Assay category
216
DNA accessibility
42
DNA binding
1
DNA methylation
1
Transcription
Target of assay
25
histone
25
histone modification
15
narrow histone mark
10
broad histone mark
9
control
8
transcription factor
4
RNA binding protein
Date released
406
November, 2017
322
August, 2017
298
October, 2019
218
June, 2019
152
May, 2020
120
May, 2019
117
February, 2021
94
December, 2017
88
November, 2018
87
February, 2023
80
April, 2019
74
October, 2018
47
September, 2018
43
July, 2019
42
May, 2021
41
November, 2019
38
August, 2021
35
December, 2018
25
January, 2019
24
February, 2018
22
October, 2017
19
March, 2020
11
September, 2017
8
January, 2018
4
July, 2018
2
May, 2022
2
November, 2020
1
August, 2018
1
August, 2022
1
December, 2019
1
May, 2023
1
October, 2022
Available data
360
bam
338
bigWig
229
bed narrowPeak
210
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
tsv
6
tagAlign
Organism
260
Homo sapiens
Biosample type
163
tissue
74
primary cell
17
cell line
6
in vitro differentiated cells
Organ
81
kidney
43
musculature of body
40
epithelium
35
heart
32
limb
30
brain
24
pancreas
18
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
259
AMP
1
T1D
Genome assembly (visualization)
229
GRCh38
206
hg19
Lab
260
AMP-T2D consortium
184
Kyle Gaulton, UCSD
Audit category:
46
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
260 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
DNAme array
total RNA-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 34 more…
primary cell
monocyte
1
13
1
1
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
+ See 20 more…
cell line
EndoC_BH1
1
16
in vitro differentiated cells
cardiomyocytes
3
pancreatic PP cell
3
See all biosamples
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