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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
24
ATAC-seq
17
pCHi-C
9
total RNA-seq
1
DNAme array
1
Hi-C
Assay category
74
DNA binding
24
DNA accessibility
9
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
54
histone
54
histone modification
32
broad histone mark
22
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
303
bigWig
bam
173
tsv
133
bed narrowPeak
90
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
126
Homo sapiens
Biosample type
57
primary cell
47
in vitro differentiated cells
16
cell line
6
tissue
Organ
21
pancreas
16
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
109
AMP
17
T1D
Genome assembly (visualization)
43
hg19
2
GRCh38
Lab
100
Kyle Gaulton, UCSD
22
AMP-T2D consortium
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
17
inconsistent ontology term
month_released!
April, 2018
files.file_type!
bam
BIOSAMPLE
ASSAY
126 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
Hi-C
primary cell
CD8-positive, alpha-beta T cell
33
1
2
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
16
tissue
islet of Langerhans
3
1
pancreas
1
thymus
1
See all biosamples
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