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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
68
total RNA-seq
16
pCHi-C
13
ATAC-seq
9
RRBS
4
Hi-C
3
single cell RNA-seq
2
small RNA-seq
1
DNAme array
Assay category
121
DNA binding
73
Transcription
13
DNA accessibility
10
DNA methylation
4
3D chromatin structure
Target of assay
118
histone
118
histone modification
66
broad histone mark
52
narrow histone mark
6
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
193
bigWig
167
bam
127
bed narrowPeak
84
tagAlign
70
tsv
9
bed bedMethyl
9
bigBed bedMethyl
6
bed bed3+
4
hdf5
Organism
237
Homo sapiens
Biosample type
237
primary cell
132
in vitro differentiated cells
117
tissue
21
cell line
Organ
13
epithelium
9
connective tissue
7
brain
7
kidney
5
heart
5
vasculature
4
blood vessel
3
musculature of body
2
adipose tissue
2
artery
2
liver
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
151
T1D
86
AMP
Genome assembly (visualization)
215
hg19
167
GRCh38
Lab
186
Kyle Gaulton, UCSD
51
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
237 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
RRBS
Hi-C
single cell RNA-seq
small RNA-seq
DNAme array
primary cell
monocyte
85
52
1
13
1
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
cerebellar granule cell
2
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