Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
98
ChIP-seq
19
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
130
Transcription
98
DNA binding
21
DNA accessibility
Target of assay
68
histone
68
histone modification
36
narrow histone mark
32
broad histone mark
22
control
8
transcription factor
2
RNA binding protein
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
212
bam
202
bigWig
168
fastq
129
tsv
52
bed narrowPeak
19
bed bed3+
19
tagAlign
17
bigBed narrowPeak
12
bed broadPeak
Organism
242
Homo sapiens
Biosample type
184
tissue
41
primary cell
21
cell line
3
in vitro differentiated cells
Organ
249
pancreas
127
connective tissue
57
adipose tissue
55
epithelium
54
liver
26
musculature of body
3
heart
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
248
AMP
1
T1D
Genome assembly (visualization)
202
hg19
195
GRCh38
Lab
248
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
21
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
249 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
125
42
1
1
pancreas
1
14
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
cell line
EndoC_BH1
4
1
16
in vitro differentiated cells
pancreatic PP cell
3
Download