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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
Assay category
63
DNA binding
Target of assay
339
histone modification
338
histone
185
broad histone mark
152
narrow histone mark
63
transcription factor
59
control
13
RNA binding protein
3
chromatin remodeller
Date released
244
November, 2017
64
November, 2018
47
August, 2017
42
December, 2017
28
December, 2018
16
May, 2021
15
October, 2018
14
January, 2019
11
August, 2021
7
October, 2019
6
April, 2019
5
February, 2021
5
May, 2019
4
June, 2019
1
November, 2019
Available data
51
bam
51
bigWig
47
fastq
28
bed narrowPeak
19
bed bed3+
4
tagAlign
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
Organism
63
Homo sapiens
Biosample type
38
in vitro differentiated cells
23
tissue
2
primary cell
Organ
34
connective tissue
12
adipose tissue
8
pancreas
4
liver
1
epithelium
Project
63
AMP
Genome assembly (visualization)
51
hg19
50
GRCh38
Lab
51
AMP-T2D consortium
12
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
in vitro differentiated cells
adipocyte
22
embryonic stem cell
12
cardiomyocytes
3
pancreatic PP cell
1
tissue
white adipose tissue
12
islet of Langerhans
7
liver
4
primary cell
skeletal muscle myoblast
2
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