Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
127
total RNA-seq
21
ATAC-seq
1
pCHi-C
Assay category
138
DNA binding
127
Transcription
21
DNA accessibility
Target of assay
58
transcription factor
53
histone
53
histone modification
28
narrow histone mark
27
control
25
broad histone mark
9
RNA binding protein
3
chromatin remodeller
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
222
bam
204
bigWig
121
tsv
94
fastq
78
bed narrowPeak
50
bigBed narrowPeak
15
bed bed3+
6
tagAlign
Organism
287
Homo sapiens
Biosample type
primary cell
175
in vitro differentiated cells
88
tissue
21
cell line
3
stem cell
Organ
63
liver
61
pancreas
45
epithelium
15
embryo
3
heart
1
connective tissue
1
thymus
Project
285
AMP
2
T1D
Genome assembly (visualization)
209
hg19
204
GRCh38
Lab
238
AMP-T2D consortium
49
Kyle Gaulton, UCSD
Audit category:
93
inconsistent ontology term
27
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
287 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
37
5
5
hepatocyte
15
induced pluripotent stem cell
9
pancreatic endoderm
9
+ See 16 more…
tissue
liver
38
islet of Langerhans
36
right lobe of liver
10
cardiac atrium
1
cardiac ventricle
1
+ See 2 more…
cell line
EndoC_BH1
1
4
16
stem cell
hESC
3
See all biosamples
Download