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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
189
ChIP-seq
34
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
189
DNA binding
Target of assay
156
histone
156
histone modification
84
broad histone mark
72
narrow histone mark
17
control
16
transcription factor
5
RNA binding protein
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
139
bigWig
136
bed narrowPeak
115
bam
90
tagAlign
24
fastq
Organism
189
Homo sapiens
Biosample type
121
primary cell
67
in vitro differentiated cells
1
cell line
Organ
9
embryo
4
epithelium
4
pancreas
Project
104
AMP
85
T1D
Genome assembly (visualization)
139
hg19
106
GRCh38
Lab
154
Kyle Gaulton, UCSD
35
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
BIOSAMPLE
ASSAY
189 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
naive thymus-derived CD4-positive, alpha-beta T cell
2
neutrophil
1
in vitro differentiated cells
embryonic stem cell
40
pancreatic endoderm
9
cardiomyocytes
3
definitive endodermal cell
3
endocrine cell
3
+ See 3 more…
cell line
EndoC_BH1
1
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