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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
67
ChIP-seq
5
ATAC-seq
Assay category
99
Transcription
67
DNA binding
5
DNA accessibility
Target of assay
37
histone
37
histone modification
19
narrow histone mark
18
broad histone mark
16
transcription factor
14
control
5
RNA binding protein
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
124
bam
120
bigWig
94
tsv
39
fastq
21
bed narrowPeak
6
tagAlign
Organism
171
Homo sapiens
Biosample type
206
primary cell
171
in vitro differentiated cells
40
tissue
21
cell line
Organ
15
embryo
5
epithelium
3
pancreas
1
connective tissue
1
heart
Project
171
AMP
Genome assembly (visualization)
120
hg19
115
GRCh38
Lab
124
AMP-T2D consortium
47
Kyle Gaulton, UCSD
Audit category:
68
inconsistent ontology term
Audit category:
2
inconsistent control read length
BIOSAMPLE
ASSAY
171 results
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total RNA-seq
ChIP-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
5
pancreatic endoderm
4
9
induced pluripotent stem cell
9
definitive endodermal cell
2
3
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