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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
total RNA-seq
69
ChIP-seq
21
ATAC-seq
1
pCHi-C
Assay category
132
Transcription
69
DNA binding
21
DNA accessibility
Target of assay
30
transcription factor
29
histone
29
histone modification
15
narrow histone mark
14
broad histone mark
11
RNA binding protein
10
control
6
chromatin remodeller
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
158
bam
158
bigWig
126
tsv
30
fastq
27
bed narrowPeak
21
bigBed narrowPeak
6
tagAlign
Organism
223
Homo sapiens
Biosample type
primary cell
132
in vitro differentiated cells
47
tissue
44
cell line
Organ
61
pancreas
26
epithelium
18
blood
18
bodily fluid
7
spleen
5
liver
3
heart
2
embryo
1
connective tissue
1
thymus
Project
221
AMP
2
T1D
Genome assembly (visualization)
158
hg19
153
GRCh38
Lab
174
AMP-T2D consortium
49
Kyle Gaulton, UCSD
Audit category:
89
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
223 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
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tissue
islet of Langerhans
36
spleen
7
cardiac atrium
1
cardiac ventricle
1
pancreas
1
+ See 1 more…
cell line
EndoC_BH1
4
1
16
GM12878
18
HepG2
5
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