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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
190
ChIP-seq
34
ATAC-seq
17
pCHi-C
3
single cell RNA-seq
2
RNA microarray
1
DNAme array
Assay category
195
Transcription
190
DNA binding
34
DNA accessibility
1
DNA methylation
Target of assay
147
histone
147
histone modification
80
broad histone mark
67
narrow histone mark
30
transcription factor
13
control
11
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
334
bigWig
312
bam
187
tsv
154
bed narrowPeak
90
tagAlign
30
fastq
21
bigBed narrowPeak
2
bed bed3+
Organism
439
Homo sapiens
Biosample type
211
primary cell
134
in vitro differentiated cells
50
tissue
44
cell line
Organ
61
pancreas
32
epithelium
18
blood
18
bodily fluid
10
liver
7
spleen
3
heart
3
kidney
2
connective tissue
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
286
AMP
153
T1D
Genome assembly (visualization)
347
hg19
307
GRCh38
Lab
235
Kyle Gaulton, UCSD
204
AMP-T2D consortium
Audit category:
92
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
439 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
single cell RNA-seq
RNA microarray
DNAme array
primary cell
monocyte
52
85
13
1
1
CD8-positive, alpha-beta T cell
2
33
1
hepatocyte
5
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
+ See 12 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
cardiomyocytes (cardiac muscle cell)
1
2
pancreatic PP cell
3
+ See 10 more…
tissue
islet of Langerhans
36
spleen
7
cardiac atrium
1
cardiac ventricle
1
kidney
1
+ See 4 more…
cell line
EndoC_BH1
4
1
16
GM12878
18
HepG2
5
See all biosamples
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