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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
307
total RNA-seq
165
ChIP-seq
51
single cell RNA-seq
34
ATAC-seq
17
pCHi-C
2
RNA microarray
1
DNAme array
Assay category
358
Transcription
165
DNA binding
34
DNA accessibility
1
DNA methylation
Target of assay
140
histone
140
histone modification
76
broad histone mark
64
narrow histone mark
16
transcription factor
9
control
5
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
472
bigWig
446
bam
346
tsv
133
bed narrowPeak
90
tagAlign
50
fastq
2
bed bed3+
Organism
577
Homo sapiens
Biosample type
259
primary cell
163
tissue
134
in vitro differentiated cells
21
cell line
Organ
218
pancreas
65
epithelium
5
liver
4
connective tissue
3
heart
3
kidney
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
424
AMP
153
T1D
Genome assembly (visualization)
485
hg19
445
GRCh38
Lab
342
AMP-T2D consortium
235
Kyle Gaulton, UCSD
Audit category:
98
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
577 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
pCHi-C
RNA microarray
DNAme array
primary cell
monocyte
52
85
13
1
1
CD8-positive, alpha-beta T cell
2
33
1
pancreatic beta cell
9
pancreatic alpha cell
7
hepatocyte
5
+ See 27 more…
tissue
islet of Langerhans
156
cardiac atrium
1
cardiac ventricle
1
kidney
1
kidney interstitium
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
cardiomyocytes (cardiac muscle cell)
1
2
pancreatic PP cell
3
+ See 10 more…
cell line
EndoC_BH1
4
1
16
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