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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
total RNA-seq
37
single cell RNA-seq
16
ATAC-seq
3
ChIP-seq
Assay category
198
Transcription
16
DNA accessibility
3
DNA binding
Target of assay
1
control
1
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Date released
188
August, 2017
157
July, 2018
72
September, 2018
60
May, 2021
55
November, 2019
53
October, 2018
39
April, 2018
26
February, 2021
24
May, 2022
18
October, 2019
11
September, 2017
10
November, 2020
7
March, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
2
May, 2019
1
August, 2022
1
February, 2020
1
February, 2023
1
June, 2018
Available data
196
bam
195
bigWig
193
tsv
39
fastq
3
tagAlign
2
bed narrowPeak
Organism
217
Homo sapiens
Biosample type
157
tissue
37
primary cell
20
cell line
3
in vitro differentiated cells
Organ
217
pancreas
58
epithelium
3
connective tissue
3
heart
2
embryo
Project
217
AMP
1
T1D
Genome assembly (visualization)
195
GRCh38
195
hg19
Lab
216
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
BIOSAMPLE
ASSAY
217 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
tissue
islet of Langerhans
156
pancreas
1
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic ductal cell
3
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cell line
EndoC_BH1
4
16
in vitro differentiated cells
pancreatic PP cell
3
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