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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
total RNA-seq
73
ATAC-seq
41
WGBS
37
single cell RNA-seq
4
ChIP-seq
Assay category
204
Transcription
73
DNA accessibility
41
DNA methylation
4
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
1
control
1
transcription factor
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
221
bam
196
bigWig
193
tsv
80
zippedFastqFolder
63
fastq
21
bed narrowPeak
6
txt
3
tagAlign
Organism
322
Homo sapiens
Biosample type
181
tissue
117
primary cell
21
cell line
3
in vitro differentiated cells
Organ
322
pancreas
139
epithelium
40
liver
4
connective tissue
3
heart
2
embryo
2
musculature of body
1
bone element
1
bone marrow
1
thymus
Project
241
AMP
80
HPAP
1
T1D
Genome assembly (visualization)
214
hg19
196
GRCh38
Lab
217
AMP-T2D consortium
80
Klaus Kaestner, Upenn
25
Kyle Gaulton, UCSD
Audit category:
26
inconsistent ontology term
BIOSAMPLE
ASSAY
322 results
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Clear Filters
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
tissue
islet of Langerhans
162
18
pancreas
1
primary cell
pancreatic alpha cell
22
25
7
pancreatic beta cell
13
16
9
pancreatic acinar cell
4
5
pancreatic delta cell
4
pancreatic ductal cell
3
+ See 4 more…
cell line
EndoC_BH1
4
16
1
in vitro differentiated cells
pancreatic PP cell
3
See all biosamples
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