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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
59
total RNA-seq
17
pCHi-C
5
ATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
154
DNA binding
63
Transcription
5
DNA accessibility
1
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
198
May, 2022
168
August, 2021
102
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
175
bigWig
135
bam
114
bed narrowPeak
84
tagAlign
51
tsv
2
bed bed3+
1
hic
Organism
236
Homo sapiens
Biosample type
187
primary cell
47
in vitro differentiated cells
2
cell line
2
stem cell
2
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
1
pancreas
1
thymus
Project
152
T1D
83
AMP
4
community
1
ITG
Genome assembly (visualization)
175
hg19
136
GRCh38
Lab
235
Kyle Gaulton, UCSD
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
240 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
84
51
1
CD8-positive, alpha-beta T cell
33
2
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
tissue
pancreas
1
thymus
1
See all biosamples
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