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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
302
total RNA-seq
285
ChIP-seq
48
single cell RNA-seq
34
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
350
Transcription
285
DNA binding
34
DNA accessibility
1
DNA methylation
Target of assay
232
histone
232
histone modification
134
broad histone mark
98
narrow histone mark
32
control
21
transcription factor
10
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
564
bigWig
561
bam
337
tsv
230
bed narrowPeak
97
bigBed narrowPeak
90
tagAlign
50
fastq
2
bed bed3+
Organism
687
Homo sapiens
Biosample type
275
tissue
259
primary cell
132
in vitro differentiated cells
21
cell line
Organ
220
pancreas
64
epithelium
50
blood vessel
50
vasculature
28
brain
24
heart
7
limb
7
musculature of body
5
artery
5
kidney
4
connective tissue
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
534
AMP
153
T1D
Genome assembly (visualization)
577
hg19
536
GRCh38
Lab
452
AMP-T2D consortium
235
Kyle Gaulton, UCSD
Audit category:
99
inconsistent ontology term
BIOSAMPLE
ASSAY
687 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
pCHi-C
DNAme array
tissue
islet of Langerhans
156
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
+ See 11 more…
primary cell
monocyte
52
85
13
1
1
CD8-positive, alpha-beta T cell
2
33
1
pancreatic beta cell
9
pancreatic alpha cell
7
kidney epithelial cell
5
+ See 27 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
cell line
EndoC_BH1
4
1
16
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