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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
total RNA-seq
36
ChIP-seq
30
ATAC-seq
Assay category
67
Transcription
36
DNA binding
30
DNA accessibility
Target of assay
34
histone
34
histone modification
17
broad histone mark
17
narrow histone mark
1
control
1
transcription factor
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
116
bam
115
bigWig
72
fastq
66
tsv
49
bed narrowPeak
14
bigBed narrowPeak
3
tagAlign
Organism
133
Homo sapiens
Biosample type
72
primary cell
37
tissue
21
cell line
3
in vitro differentiated cells
Organ
133
pancreas
87
epithelium
3
heart
2
connective tissue
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
132
AMP
1
T1D
Genome assembly (visualization)
115
GRCh38
115
hg19
Lab
132
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
21
inconsistent ontology term
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
133 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
tissue
islet of Langerhans
36
pancreas
1
cell line
EndoC_BH1
4
1
16
in vitro differentiated cells
pancreatic PP cell
3
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