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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
total RNA-seq
38
ChIP-seq
30
ATAC-seq
Assay category
67
Transcription
38
DNA binding
30
DNA accessibility
Target of assay
35
histone
35
histone modification
18
narrow histone mark
17
broad histone mark
2
control
1
transcription factor
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
118
bam
116
bigWig
72
fastq
66
tsv
50
bed narrowPeak
15
bigBed narrowPeak
3
tagAlign
Organism
135
Homo sapiens
Biosample type
72
primary cell
39
tissue
21
cell line
3
in vitro differentiated cells
Organ
135
pancreas
92
epithelium
50
blood vessel
50
vasculature
28
brain
24
heart
7
limb
7
musculature of body
5
artery
5
kidney
2
connective tissue
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
134
AMP
1
T1D
Genome assembly (visualization)
116
GRCh38
116
hg19
Lab
134
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
21
inconsistent ontology term
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
135 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
tissue
islet of Langerhans
36
body of pancreas
2
pancreas
1
cell line
EndoC_BH1
4
1
16
in vitro differentiated cells
pancreatic PP cell
3
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