Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
75
total RNA-seq
40
single cell RNA-seq
17
pCHi-C
8
ATAC-seq
Assay category
154
DNA binding
115
Transcription
8
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
198
May, 2022
168
August, 2021
102
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
40
May, 2024
19
April, 2020
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
178
bigWig
135
bam
114
bed narrowPeak
84
tagAlign
51
tsv
41
fastq
19
zippedFastqFolder
2
bed bed3+
Organism
294
Homo sapiens
Biosample type
245
primary cell
47
in vitro differentiated cells
2
tissue
Organ
20
pancreas
19
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
83
AMP
59
HPAP
Genome assembly (visualization)
175
hg19
138
GRCh38
Lab
235
Kyle Gaulton, UCSD
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
1
inconsistent ontology term
organ_slims!
embryo
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
294 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
ATAC-seq
primary cell
monocyte
84
51
1
Langerhans cell
40
CD8-positive, alpha-beta T cell
33
2
1
pancreatic alpha cell
15
2
CD4-positive, alpha-beta T cell
2
+ See 13 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
pancreas
1
thymus
1
See all biosamples
Download