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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
637
total RNA-seq
169
ChIP-seq
32
ATAC-seq
27
snATAC-seq
18
pCHi-C
18
single cell RNA-seq
3
snDrop-seq
1
DNAme array
Assay category
655
Transcription
169
DNA binding
59
DNA accessibility
1
DNA methylation
Target of assay
138
histone
138
histone modification
76
broad histone mark
62
narrow histone mark
20
transcription factor
11
control
5
RNA binding protein
Date released
533
February, 2021
400
November, 2017
382
August, 2017
372
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
145
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
761
bigWig
747
bam
636
tsv
145
bed narrowPeak
95
tagAlign
39
fastq
6
csv
5
txt
4
bed bed3+
4
bed bedgraph
2
bed bed3
Organism
905
Homo sapiens
Biosample type
435
tissue
247
primary cell
153
in vitro differentiated cells
70
cell line
Organ
457
connective tissue
386
adipose tissue
bone element
93
pancreas
69
heart
66
artery
66
blood vessel
66
vasculature
epithelium
8
kidney
8
skeleton
6
limb
3
liver
2
embryo
1
bone marrow
1
thymus
Project
715
AMP
151
T1D
39
HPAP
Genome assembly (visualization)
789
hg19
743
GRCh38
Lab
632
AMP-T2D consortium
234
Kyle Gaulton, UCSD
39
Klaus Kaestner, Upenn
Audit category:
86
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
epithelium
bone element
BIOSAMPLE
ASSAY
905 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
single cell RNA-seq
snDrop-seq
DNAme array
tissue
adipose tissue
381
islet of Langerhans
36
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 8 more…
primary cell
monocyte
52
85
13
1
1
Langerhans cell
27
12
CD8-positive, alpha-beta T cell
2
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
osteoblast
1
1
1
+ See 12 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
cardiac precursors (cardiac muscle cell)
18
induced pluripotent stem cell
9
adipocyte
4
4
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
HepG2
1
1
iPSC derived cell line
2
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