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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
29
ATAC-seq
17
pCHi-C
3
ChIP-seq
1
DNAme array
Assay category
98
Transcription
29
DNA accessibility
3
DNA binding
1
DNA methylation
Target of assay
histone
119
histone modification
66
broad histone mark
53
narrow histone mark
3
control
Date released
689
February, 2021
318
November, 2017
314
May, 2020
271
August, 2021
200
May, 2022
199
June, 2019
189
February, 2023
182
August, 2017
168
July, 2018
148
May, 2021
110
October, 2019
108
July, 2019
88
November, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
46
November, 2019
46
October, 2018
44
December, 2017
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
107
bam
99
bigWig
94
tsv
13
bed narrowPeak
2
bed bed3+
Organism
148
Homo sapiens
Biosample type
in vitro differentiated cells
88
primary cell
40
tissue
20
cell line
Organ
57
pancreas
20
epithelium
2
heart
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
80
AMP
68
T1D
Genome assembly (visualization)
112
hg19
107
GRCh38
Lab
74
AMP-T2D consortium
74
Kyle Gaulton, UCSD
Audit category:
21
inconsistent ontology term
target.investigated_as!
histone
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
148 results
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total RNA-seq
ATAC-seq
pCHi-C
ChIP-seq
DNAme array
primary cell
monocyte
52
13
1
1
CD8-positive, alpha-beta T cell
2
1
3
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
4
16
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