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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
total RNA-seq
41
WGBS
35
single cell RNA-seq
32
ChIP-seq
Assay category
DNA accessibility
87
Transcription
41
DNA methylation
32
DNA binding
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
74
zippedFastqFolder
65
fastq
64
bam
58
bigWig
32
bed narrowPeak
26
tsv
6
txt
1
csv
Organism
160
Homo sapiens
Biosample type
133
primary cell
27
tissue
Organ
105
pancreas
88
epithelium
20
liver
1
musculature of body
Project
86
AMP
74
HPAP
Genome assembly (visualization)
58
GRCh38
58
hg19
Lab
74
Klaus Kaestner, Upenn
60
AMP-T2D consortium
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
Audit category:
32
missing controlled_by
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
160 results
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total RNA-seq
WGBS
single cell RNA-seq
ChIP-seq
primary cell
pancreatic alpha cell
10
25
Langerhans cell
33
pancreatic beta cell
10
16
pancreatic ductal cell
4
13
pancreatic endocrine cell
11
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tissue
liver
20
islet of Langerhans
6
skeletal muscle tissue
1
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