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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
565
total RNA-seq
40
single cell RNA-seq
Assay category
605
Transcription
103
DNA accessibility
41
DNA methylation
8
DNA binding
Date released
551
February, 2021
190
May, 2020
182
May, 2021
180
August, 2021
118
July, 2018
65
July, 2019
54
May, 2022
47
September, 2023
30
October, 2019
25
February, 2020
20
November, 2019
18
February, 2023
18
September, 2020
15
March, 2020
9
April, 2020
8
December, 2019
5
April, 2018
4
March, 2023
4
May, 2023
4
November, 2020
Available data
551
bam
550
tsv
545
bigWig
33
zippedFastqFolder
fastq
11
txt
6
csv
Organism
605
Homo sapiens
Biosample type
471
tissue
78
cell line
34
primary cell
22
in vitro differentiated cells
Organ
449
connective tissue
386
adipose tissue
58
bone element
52
artery
52
blood vessel
52
heart
52
vasculature
26
epithelium
26
pancreas
21
liver
5
kidney
1
musculature of body
Project
572
AMP
33
HPAP
Genome assembly (visualization)
545
GRCh38
545
hg19
Lab
552
AMP-T2D consortium
33
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
Audit category:
44
inconsistent ontology term
5
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
605 results
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total RNA-seq
single cell RNA-seq
tissue
adipose tissue
381
bone tissue
58
liver
20
1
kidney
5
visceral abdominal adipose tissue
3
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
26
primary cell
Langerhans cell
33
osteoblast
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
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