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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
total RNA-seq
22
snATAC-seq
Assay category
406
DNA binding
99
DNA accessibility
41
DNA methylation
34
Transcription
Target of assay
244
transcription factor
88
histone
88
histone modification
71
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
410
bam
354
bigWig
351
bed narrowPeak
342
fastq
312
bigBed narrowPeak
134
zippedFastqFolder
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
1
bed bed3+
1
txt
Organism
580
Homo sapiens
Biosample type
315
cell line
143
primary cell
122
tissue
Organ
335
liver
98
pancreas
91
brain
86
epithelium
6
vasculature
3
blood vessel
2
musculature of body
Project
446
AMP
134
HPAP
Genome assembly (visualization)
320
hg19
280
GRCh38
Lab
408
AMP-T2D consortium
134
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
580 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
cell line
HepG2
315
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
astrocyte of the cerebellum
3
+ See 2 more…
tissue
layer of hippocampus
22
liver
20
islet of Langerhans
18
caudate nucleus
15
substantia nigra
15
+ See 4 more…
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