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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
38
ATAC-seq
26
total RNA-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
90
DNA binding
39
DNA accessibility
27
Transcription
Target of assay
42
transcription factor
29
histone
29
histone modification
19
control
15
broad histone mark
14
narrow histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
539
February, 2021
397
November, 2017
352
August, 2017
312
August, 2021
259
October, 2019
194
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
112
February, 2023
104
May, 2021
90
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
47
September, 2023
46
March, 2020
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
March, 2023
4
November, 2020
3
December, 2019
1
August, 2018
1
August, 2022
1
October, 2022
Available data
114
bam
114
fastq
108
bed narrowPeak
90
bigWig
50
bigBed narrowPeak
16
bed bed3+
7
txt
Organism
156
Homo sapiens
Biosample type
primary cell
114
tissue
39
in vitro differentiated cells
3
stem cell
Organ
103
liver
24
pancreas
15
epithelium
9
embryo
2
musculature of body
Project
156
AMP
Genome assembly (visualization)
114
hg19
75
GRCh38
Lab
92
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
10
inconsistent control read length
biosample_type!
primary cell
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
156 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
tissue
liver
38
20
20
islet of Langerhans
18
6
right lobe of liver
10
skeletal muscle tissue
1
1
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
stem cell
hESC
3
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