Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
43
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
3
snATAC-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
132
DNA accessibility
45
Transcription
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
103
bed narrowPeak
24
bam
24
fastq
23
bigWig
14
txt
10
bed bed3
5
bed bed3+
4
tsv
3
bed bedgraph
Organism
182
Homo sapiens
Biosample type
primary cell
161
tissue
16
in vitro differentiated cells
6
cell line
Organ
43
pancreas
40
liver
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
15
epithelium
14
connective tissue
8
bone element
8
skeleton
2
musculature of body
1
adipose tissue
1
brain
Project
160
AMP
23
T1D
Genome assembly (visualization)
84
hg19
35
GRCh38
Lab
93
AMP-T2D consortium
47
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
1
audit script error
biosample_type!
primary cell
BIOSAMPLE
ASSAY
183 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
snATAC-seq
HiChIP
single cell RNA-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
islet of Langerhans
29
11
2
liver
20
20
coronary artery
35
retina
15
2
pigmented layer of retina
12
2
+ See 8 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
See all biosamples
Download