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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
total RNA-seq
59
ATAC-seq
44
ChIP-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
154
Transcription
60
DNA accessibility
44
DNA binding
Target of assay
22
histone
22
histone modification
16
transcription factor
12
narrow histone mark
10
broad histone mark
6
control
5
RNA binding protein
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
152
bam
152
bigWig
121
tsv
44
bed narrowPeak
24
fastq
7
txt
6
tagAlign
1
bed bed3+
Organism
259
Homo sapiens
Biosample type
primary cell
132
in vitro differentiated cells
106
tissue
21
cell line
Organ
85
pancreas
40
liver
26
epithelium
3
heart
2
embryo
2
musculature of body
1
connective tissue
1
thymus
Project
257
AMP
2
T1D
Genome assembly (visualization)
171
hg19
127
GRCh38
Lab
146
AMP-T2D consortium
73
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
Audit category:
89
inconsistent ontology term
1
audit script error
biosample_type!
primary cell
BIOSAMPLE
ASSAY
259 results
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total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
single cell RNA-seq
snATAC-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
5
37
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
tissue
islet of Langerhans
42
18
liver
20
20
skeletal muscle tissue
1
1
cardiac atrium
1
cardiac ventricle
1
+ See 2 more…
cell line
EndoC_BH1
4
16
1
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