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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
total RNA-seq
41
WGBS
39
ATAC-seq
34
single cell RNA-seq
22
snATAC-seq
2
ChIP-seq
2
Hi-C
Assay category
80
Transcription
61
DNA accessibility
41
DNA methylation
2
3D chromatin structure
2
DNA binding
Target of assay
2
control
Date released
692
February, 2021
314
May, 2020
269
August, 2017
266
May, 2021
213
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
125
October, 2019
101
July, 2019
93
November, 2017
61
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
11
October, 2017
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
83
bam
bed narrowPeak
51
bigWig
24
fastq
20
tsv
7
txt
2
bedpe bed3+
2
hic
1
bed bed3+
Organism
186
Homo sapiens
Biosample type
134
primary cell
48
tissue
4
cell line
Organ
110
pancreas
84
epithelium
20
liver
2
musculature of body
Project
134
HPAP
52
AMP
Genome assembly (visualization)
23
hg19
20
GRCh38
Lab
134
Klaus Kaestner, Upenn
26
AMP-T2D consortium
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
186 results
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Clear Filters
total RNA-seq
WGBS
ATAC-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
tissue
islet of Langerhans
25
1
liver
20
skeletal muscle tissue
1
1
cell line
EndoC_BH1
1
2
1
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