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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ATAC-seq
51
total RNA-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
Assay category
85
Transcription
79
DNA accessibility
41
DNA methylation
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
134
zippedFastqFolder
38
bed narrowPeak
25
tsv
24
bam
24
fastq
bigWig
7
txt
1
bed bed3+
Organism
205
Homo sapiens
Biosample type
134
primary cell
71
tissue
Organ
105
pancreas
80
epithelium
21
liver
12
brain
4
musculature of body
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
1
eye
1
nerve
1
spinal cord
Project
134
HPAP
71
AMP
Genome assembly (visualization)
19
hg19
Lab
134
Klaus Kaestner, Upenn
27
AMP-T2D consortium
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
205 results
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ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
islet of Langerhans
18
6
liver
20
skeletal muscle tissue
1
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
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