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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
18
ATAC-seq
9
DNase-seq
7
WGBS
6
total RNA-seq
1
FAIRE-seq
Assay category
70
DNA binding
28
DNA accessibility
7
DNA methylation
6
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
134
zippedFastqFolder
112
fastq
111
bam
111
bed narrowPeak
100
bigWig
73
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
1
csv
Organism
111
Homo sapiens
Biosample type
61
cell line
50
tissue
Organ
53
liver
31
pancreas
15
blood
15
bodily fluid
9
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
111
AMP
Genome assembly (visualization)
89
hg19
79
GRCh38
Lab
87
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
111 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
total RNA-seq
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
tissue
islet of Langerhans
18
6
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
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