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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
48
WGBS
35
single cell RNA-seq
26
total RNA-seq
Assay category
DNA accessibility
70
DNA binding
61
Transcription
48
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
84
fastq
83
bam
74
zippedFastqFolder
70
bigWig
63
bed narrowPeak
63
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
txt
1
csv
Organism
179
Homo sapiens
Biosample type
75
primary cell
61
cell line
43
tissue
Organ
70
liver
51
pancreas
41
epithelium
15
blood
15
bodily fluid
8
spleen
1
musculature of body
Project
105
AMP
74
HPAP
Genome assembly (visualization)
70
GRCh38
61
hg19
Lab
79
AMP-T2D consortium
74
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
April, 2019
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
179 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
total RNA-seq
primary cell
Langerhans cell
33
pancreatic alpha cell
25
pancreatic beta cell
16
pancreatic cell
1
cell line
HepG2
45
1
GM12878
15
tissue
liver
4
20
spleen
6
2
islet of Langerhans
6
body of pancreas
2
pancreas
2
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