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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
33
single cell RNA-seq
26
total RNA-seq
21
snATAC-seq
10
MeRIP-seq
Assay category
98
DNA accessibility
59
Transcription
41
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
235
May, 2021
198
May, 2022
168
August, 2021
102
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
40
May, 2024
19
April, 2020
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
134
zippedFastqFolder
38
bed narrowPeak
24
bam
24
fastq
20
bigWig
6
txt
Organism
208
Homo sapiens
Biosample type
134
primary cell
68
tissue
6
cell line
Organ
114
pancreas
86
epithelium
40
liver
Project
134
HPAP
74
AMP
Genome assembly (visualization)
38
hg19
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
month_released!
January, 2019
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
208 results
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ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
MeRIP-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
4
cell line
EndoC_BH1
6
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