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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
41
WGBS
32
ChIP-seq
32
snATAC-seq
Assay category
123
DNA accessibility
Transcription
41
DNA methylation
32
DNA binding
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
101
zippedFastqFolder
84
bed narrowPeak
66
bigWig
64
bam
64
fastq
14
bigBed narrowPeak
1
bed bed3+
1
txt
Organism
195
Homo sapiens
Biosample type
147
primary cell
49
tissue
Organ
144
pancreas
115
epithelium
20
liver
10
lung
1
musculature of body
Project
101
HPAP
85
AMP
10
LungMap
Genome assembly (visualization)
85
hg19
46
GRCh38
Lab
101
Klaus Kaestner, Upenn
47
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
Audit category:
1
audit script error
Audit category:
32
missing controlled_by
assay_slims!
Transcription
BIOSAMPLE
ASSAY
196 results
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ATAC-seq
WGBS
ChIP-seq
snATAC-seq
primary cell
pancreatic alpha cell
25
25
pancreatic beta cell
17
16
Langerhans cell
21
pancreatic ductal cell
4
13
pancreatic acinar cell
7
8
+ See 1 more…
tissue
liver
20
islet of Langerhans
18
lung
10
skeletal muscle tissue
1
See all biosamples
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