Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
total RNA-seq
131
single cell RNA-seq
80
ATAC-seq
41
WGBS
32
snATAC-seq
Assay category
293
Transcription
112
DNA accessibility
41
DNA methylation
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
188
bam
187
bigWig
164
tsv
153
zippedFastqFolder
115
fastq
38
bed narrowPeak
7
txt
1
bed bed3+
Organism
445
Homo sapiens
Biosample type
241
primary cell
205
tissue
Organ
280
pancreas
132
epithelium
40
liver
19
lung
2
connective tissue
2
musculature of body
Project
234
AMP
193
HPAP
19
LungMap
Genome assembly (visualization)
203
hg19
167
GRCh38
Lab
193
Klaus Kaestner, Upenn
170
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
Audit category:
6
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
446 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
73
21
pancreatic alpha cell
15
7
24
25
pancreatic beta cell
1
9
14
16
pancreatic acinar cell
5
4
pancreatic delta cell
4
+ See 11 more…
tissue
islet of Langerhans
126
18
liver
20
20
lung
9
10
skeletal muscle tissue
1
1
See all biosamples
Download