Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ATAC-seq
107
single cell RNA-seq
100
total RNA-seq
43
ChIP-seq
7
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
207
Transcription
121
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
64
March, 2020
61
November, 2019
49
April, 2018
47
September, 2023
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
144
bed narrowPeak
zippedFastqFolder
123
tsv
73
bam
67
bigWig
64
txt
64
xls
24
fastq
24
tagAlign
6
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
384
Homo sapiens
Biosample type
295
tissue
44
cell line
42
in vitro differentiated cells
4
primary cell
Organ
130
kidney
92
heart
75
liver
28
pancreas
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
2
artery
2
musculature of body
1
adipose tissue
Project
385
AMP
Genome assembly (visualization)
105
GRCh38
99
hg19
Lab
153
AMP-T2D consortium
128
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
36
Bing Ren, UCSD
24
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
audit script error
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
385 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
8
49
6
1
liver
20
20
islet of Langerhans
18
7
1
heart left ventricle
18
left cardiac atrium
18
+ See 13 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
See all biosamples
Download