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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ATAC-seq
85
total RNA-seq
41
WGBS
41
single cell RNA-seq
27
snATAC-seq
18
ChIP-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
170
DNA accessibility
126
Transcription
41
DNA methylation
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
235
May, 2021
198
May, 2022
168
August, 2021
102
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
40
May, 2024
19
April, 2020
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
134
zippedFastqFolder
118
bed narrowPeak
64
xls
63
txt
36
bigWig
24
bam
24
fastq
10
tsv
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
366
Homo sapiens
Biosample type
194
tissue
134
primary cell
34
cell line
4
in vitro differentiated cells
Organ
130
kidney
106
pancreas
80
epithelium
71
liver
4
connective tissue
Project
232
AMP
134
HPAP
Genome assembly (visualization)
64
GRCh38
58
hg19
Lab
AMP-T2D consortium
134
Klaus Kaestner, Upenn
128
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
36
Bing Ren, UCSD
24
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
366 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
ChIP-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
liver
20
20
islet of Langerhans
18
7
1
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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