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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
102
ATAC-seq
76
total RNA-seq
7
snATAC-seq
2
Hi-C
1
RNA microarray
Assay category
183
Transcription
109
DNA accessibility
2
3D chromatin structure
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
August, 2022
Available data
102
bed narrowPeak
99
tsv
64
txt
64
xls
24
bam
24
fastq
20
bigWig
1
bed bed3+
1
bedpe bed3+
1
hic
Organism
294
Homo sapiens
Biosample type
295
tissue
138
primary cell
44
cell line
42
in vitro differentiated cells
Organ
128
kidney
92
heart
40
liver
26
pancreas
6
blood vessel
6
vasculature
2
artery
2
musculature of body
1
adipose tissue
1
connective tissue
Project
295
AMP
Genome assembly (visualization)
64
GRCh38
40
hg19
Lab
128
Katalin Susztak, Upenn
101
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
1
audit script error
month_released!
August, 2022
BIOSAMPLE
ASSAY
295 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
liver
20
20
islet of Langerhans
18
7
1
heart left ventricle
18
left cardiac atrium
18
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