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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
35
ChIP-seq
33
single cell RNA-seq
24
DNase-seq
21
snATAC-seq
Assay category
84
DNA accessibility
41
DNA methylation
35
DNA binding
33
Transcription
Target of assay
22
histone
22
histone modification
13
narrow histone mark
9
broad histone mark
9
control
4
RNA binding protein
4
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
134
zippedFastqFolder
59
bam
50
bed narrowPeak
50
bigWig
47
bigBed narrowPeak
27
bed bed3+
24
bed broadPeak
24
bigBed broadPeak
4
tagAlign
Organism
193
Homo sapiens
Biosample type
458
tissue
193
primary cell
44
cell line
42
in vitro differentiated cells
Organ
104
epithelium
80
pancreas
17
connective tissue
13
kidney
11
musculature of body
8
heart
6
liver
5
brain
4
eye
4
vasculature
2
blood vessel
Project
134
HPAP
59
AMP
Genome assembly (visualization)
50
GRCh38
43
hg19
Lab
134
Klaus Kaestner, Upenn
59
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
month_released!
December, 2017
BIOSAMPLE
ASSAY
193 results
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WGBS
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
cardiac fibroblast
5
3
skeletal muscle satellite cell
8
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