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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
70
ChIP-seq
51
total RNA-seq
48
WGBS
35
single cell RNA-seq
22
snATAC-seq
9
DNase-seq
1
FAIRE-seq
Assay category
109
DNA accessibility
86
Transcription
70
DNA binding
48
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
112
fastq
111
bam
111
bed narrowPeak
100
bigWig
73
bigBed narrowPeak
25
tsv
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
1
csv
Organism
313
Homo sapiens
Biosample type
135
primary cell
117
tissue
61
cell line
Organ
112
pancreas
94
liver
80
epithelium
15
blood
15
bodily fluid
14
brain
9
spleen
4
musculature of body
3
adipose tissue
3
blood vessel
3
connective tissue
3
heart
3
limb
3
vasculature
2
artery
1
eye
1
nerve
1
spinal cord
Project
179
AMP
134
HPAP
Genome assembly (visualization)
110
hg19
79
GRCh38
Lab
134
Klaus Kaestner, Upenn
115
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
313 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
pancreatic cell
1
tissue
liver
20
4
20
2
islet of Langerhans
18
6
spleen
6
2
1
body of pancreas
1
2
2
pancreas
2
1
+ See 26 more…
cell line
HepG2
45
1
GM12878
15
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