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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
total RNA-seq
38
ATAC-seq
34
single cell RNA-seq
22
snATAC-seq
Assay category
85
Transcription
60
DNA accessibility
Date released
683
February, 2021
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
54
zippedFastqFolder
38
bed narrowPeak
25
tsv
24
bam
24
fastq
20
bigWig
7
txt
1
bed bed3+
Organism
145
Homo sapiens
Biosample type
91
tissue
54
primary cell
Organ
105
pancreas
epithelium
41
liver
12
brain
4
musculature of body
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
1
eye
1
nerve
1
spinal cord
Project
91
AMP
54
HPAP
Genome assembly (visualization)
39
hg19
Lab
54
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
27
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
epithelium
month_released!
November, 2017
BIOSAMPLE
ASSAY
145 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
liver
20
20
islet of Langerhans
6
18
skeletal muscle tissue
1
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
+ See 23 more…
primary cell
Langerhans cell
33
21
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