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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
146
total RNA-seq
82
single cell RNA-seq
77
ATAC-seq
41
WGBS
31
ChIP-seq
22
snATAC-seq
Assay category
286
DNA accessibility
228
Transcription
41
DNA methylation
31
DNA binding
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
406
bam
394
bigWig
248
bed narrowPeak
210
bigBed narrowPeak
188
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
164
tsv
134
zippedFastqFolder
74
fastq
7
txt
Organism
586
Homo sapiens
Biosample type
349
tissue
237
primary cell
Organ
265
pancreas
133
epithelium
81
kidney
45
musculature of body
42
liver
35
heart
32
limb
30
brain
20
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
1
adipose tissue
Project
452
AMP
134
HPAP
Genome assembly (visualization)
390
hg19
374
GRCh38
Lab
388
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
32
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
586 results
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Clear Filters
DNase-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
ChIP-seq
snATAC-seq
tissue
islet of Langerhans
126
18
liver
20
20
heart
18
muscle of arm
17
kidney
13
+ See 37 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
7
22
25
pancreatic beta cell
9
13
16
pancreatic acinar cell
5
4
cardiac fibroblast
3
5
+ See 33 more…
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