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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
34
single cell RNA-seq
31
ChIP-seq
26
total RNA-seq
Assay category
DNA accessibility
60
Transcription
41
DNA methylation
31
DNA binding
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
74
zippedFastqFolder
37
bam
23
bed narrowPeak
23
bigBed narrowPeak
23
bigWig
6
fastq
6
txt
Organism
132
Homo sapiens
Biosample type
105
primary cell
27
tissue
Organ
47
epithelium
47
pancreas
20
liver
12
connective tissue
11
musculature of body
5
heart
3
eye
3
kidney
Project
74
HPAP
58
AMP
Genome assembly (visualization)
23
GRCh38
23
hg19
Lab
74
Klaus Kaestner, Upenn
32
AMP-T2D consortium
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
132 results
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Clear Filters
WGBS
single cell RNA-seq
ChIP-seq
total RNA-seq
primary cell
Langerhans cell
33
pancreatic alpha cell
25
pancreatic beta cell
16
skeletal muscle satellite cell
8
mesenchymal stem cell
7
+ See 5 more…
tissue
liver
20
islet of Langerhans
6
skeletal muscle tissue
1
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