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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
286
DNA accessibility
60
Transcription
41
DNA methylation
DNA binding
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
225
bed narrowPeak
211
bam
207
bigWig
188
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
187
bigBed narrowPeak
134
zippedFastqFolder
24
fastq
7
txt
Organism
387
Homo sapiens
Biosample type
229
tissue
158
primary cell
Organ
108
pancreas
94
epithelium
78
kidney
42
liver
35
musculature of body
32
limb
30
brain
30
heart
18
ureter
7
vasculature
6
connective tissue
5
blood vessel
4
eye
2
artery
1
adipose tissue
Project
253
AMP
134
HPAP
Genome assembly (visualization)
203
hg19
187
GRCh38
Lab
189
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
387 results
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DNase-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
tissue
liver
20
20
islet of Langerhans
18
6
heart
18
muscle of arm
17
kidney
13
+ See 37 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cardiac fibroblast
3
+ See 19 more…
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