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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
DNase-seq
77
ATAC-seq
41
WGBS
33
single cell RNA-seq
26
total RNA-seq
21
ChIP-seq
21
snATAC-seq
Assay category
252
DNA accessibility
59
Transcription
41
DNA methylation
21
DNA binding
Target of assay
11
histone
11
histone modification
7
narrow histone mark
6
control
4
RNA binding protein
4
broad histone mark
4
transcription factor
Date released
715
February, 2021
406
November, 2017
399
May, 2021
385
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
205
February, 2023
198
May, 2022
175
June, 2019
168
July, 2018
113
May, 2019
98
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
207
bed narrowPeak
199
bam
189
bigWig
169
bigBed narrowPeak
154
bed bed3+
154
bed broadPeak
154
bigBed broadPeak
134
zippedFastqFolder
24
fastq
6
txt
Organism
373
Homo sapiens
Biosample type
195
tissue
178
primary cell
Organ
108
pancreas
100
epithelium
81
kidney
musculature of body
42
liver
35
heart
32
limb
30
brain
18
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
1
adipose tissue
Project
239
AMP
134
HPAP
Genome assembly (visualization)
184
hg19
169
GRCh38
Lab
175
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
373 results
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Clear Filters
DNase-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
tissue
liver
20
20
islet of Langerhans
18
6
heart
18
kidney
13
brain
12
+ See 32 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
cardiac fibroblast
3
5
mesenchymal stem cell
7
+ See 19 more…
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