Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ATAC-seq
41
WGBS
34
single cell RNA-seq
28
total RNA-seq
23
ChIP-seq
21
snATAC-seq
1
pCHi-C
Assay category
115
DNA accessibility
62
Transcription
41
DNA methylation
23
DNA binding
Target of assay
23
control
Date released
259
August, 2021
161
May, 2022
160
February, 2023
141
February, 2021
135
August, 2017
125
November, 2017
97
October, 2019
83
May, 2021
81
May, 2020
59
September, 2020
47
September, 2023
32
March, 2020
31
June, 2019
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
17
July, 2019
17
November, 2018
16
January, 2021
15
April, 2019
14
May, 2023
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
134
zippedFastqFolder
29
bam
23
tagAlign
6
fastq
6
txt
1
tsv
Organism
242
Homo sapiens
Biosample type
191
primary cell
50
tissue
1
cell line
Organ
86
pancreas
80
epithelium
44
liver
1
musculature of body
Project
134
HPAP
108
AMP
Genome assembly (visualization)
hg19
207
GRCh38
Lab
134
Klaus Kaestner, Upenn
82
AMP-T2D consortium
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
assembly!
hg19
BIOSAMPLE
ASSAY
242 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
+ See 3 more…
tissue
liver
20
23
islet of Langerhans
6
skeletal muscle tissue
1
cell line
HepG2
1
See all biosamples
Download