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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
231
total RNA-seq
177
ATAC-seq
74
ChIP-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
1
pCHi-C
Assay category
265
Transcription
199
DNA accessibility
74
DNA binding
41
DNA methylation
Target of assay
43
histone
43
histone modification
35
narrow histone mark
31
control
8
broad histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
346
bam
311
bigWig
204
tsv
134
zippedFastqFolder
81
bed narrowPeak
63
fastq
50
tagAlign
7
txt
1
bed bed3+
Organism
580
Homo sapiens
Biosample type
281
primary cell
259
tissue
39
in vitro differentiated cells
1
cell line
Organ
234
liver
104
pancreas
80
epithelium
13
embryo
2
musculature of body
Project
401
AMP
134
HPAP
45
T1D
Genome assembly (visualization)
330
hg19
238
GRCh38
Lab
337
AMP-T2D consortium
134
Klaus Kaestner, Upenn
69
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
Audit category:
8
inconsistent ontology term
1
audit script error
Audit category:
2
inconsistent control read length
BIOSAMPLE
ASSAY
580 results
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total RNA-seq
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
snATAC-seq
pCHi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
+ See 28 more…
tissue
liver
163
20
50
islet of Langerhans
6
18
skeletal muscle tissue
1
1
in vitro differentiated cells
pancreatic endoderm
4
9
definitive endodermal cell
2
3
embryonic stem cell
2
3
endocrine cell
2
3
posterior foregut
2
3
+ See 2 more…
cell line
HepG2
1
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